American Campus Tree Genomes
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Contents:
Introduction
Course Setup
Module 1: Plant Genomics
Lesson 1: Introduction to Plant Genomics
Lesson 2: Introduction to Biological Computing
1.2 Instructions
1.2 Resources
1.2 Lesson
1.2 Lab Exercises
Lesson 3: Compute Clusters and Programming Languages
Lesson 4: Writing a Scientific Manuscript
Module 2: Planning a Genome Project
Module 3: Genome Assembly
Module 4: Genome Annotation
Module 5: Comparative Genomics
Module 6: Publishing Scientific Results
American Campus Tree Genomes
Module 1: Plant Genomics
Lesson 2: Introduction to Biological Computing
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Lesson 2: Introduction to Biological Computing
Learning Material:
1.2 Instructions
1.2 Resources
1.2 Lesson
Learning Objectives
Vocabulary
Learning Material
1.2 Lab Exercises
Overview
Task A: Download and run FASTQC
Step 1. Use Conda to install a package
Step 2. Download some Illumina data
Step 3: Look at our fastq files
Task B: Run FASTQC and assess the quality of some Illumina shotgun data
Step 1: Check out the help options for fastqc
Step 2: Download the results
Mastering Content
Step 1: Conda environments
Step 2: Messy data
Step 3: Compression