Course Setup

This course will require both computational infrastructure and software to complete. Choose from one of the infrastructure types for this course described in the following sections. Depending on the selection you make, you may or may not have to install software. Instructions for installing the necessary software are provided.

Computational Setup Options:

• Computational Infrastructure
  • Setup for Praxis AI (Cloud-Based)
  • Setup on a SLURM Cluster
  • Setup for a Stand-Alone Workstation Using Docker
  • Setup for a Stand-Alone Workstation Without Docker
• Software Installation and Usage
  • Software Installation: Praxis AI
  • Software Installation: Conda
    • Conda Installation
    • Quick How-To
    • Base Software Installation
    • Additional Software Installation
      • Braker2
      • EDTA
      • BUSCO
  • Software Usage: Docker
    • Docker or Singularity Installation
    • How to Run Software with Docker
    • How to Run Software with Singularity
    • How to Run Docker in Interactive Mode
      • Interactive Mode with Docker
      • Interactive with Singularity