American Campus Tree Genomes
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Contents:
Introduction
Course Setup
Module 1: Plant Genomics
Module 2: Planning a Genome Project
Module 3: Genome Assembly
Lesson 1: Assembly Algorithms
Lesson 2: Building a Draft Genome
Lesson 3: Scaffolding Algorithms
Lesson 4: Interacting with Hi-C Maps
Lesson 5: Assessing Completeness
Module 4: Genome Annotation
Module 5: Comparative Genomics
Module 6: Publishing Scientific Results
American Campus Tree Genomes
Module 3: Genome Assembly
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Module 3: Genome Assembly
Lessons:
Lesson 1: Assembly Algorithms
3.1 Instructions
3.1 Resources
3.1 Lesson
Learning Objectives
Vocabulary
Learning Material
3.1 Lab Exercises
Overview
Task A
Mastering Content
Lesson 2: Building a Draft Genome
3.2 Instructions
3.2 Resources
3.2 Lesson
Learning Objectives
Vocabulary
Learning Material
3.2 Lab Exercises
Overview
Task A:
Mastering Content
So I have an Assembly… Now What?
Assessing haplotypes
Lesson 3: Scaffolding Algorithms
3.3 Instructions
3.3 Resources
3.3 Lesson
Learning Objectives
Vocabulary
Learning Material
3.3 Lab Exercises
Overview
Task A
Lesson 4: Interacting with Hi-C Maps
3.4 Instructions
3.4 Resources
3.4 Lesson
Learning Objectives
Vocabulary
Learning Material
3.4 Lab Exercises
Overview
Task A
Task B
Mastering Content
Finding mis-assemblies
Lesson 5: Assessing Completeness
3.5 Instructions
3.5 Resources
3.5 Lesson
Learning Objectives
Vocabulary
Learning Material
3.5 Lab Exercises
Task A
Task B
Mastering Content
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