Module 1: Plant Genomics

Lessons:

• Lesson 1: Introduction to Plant Genomics
  • 1.1 Instructions
  • 1.1 Resources
  • 1.1 Lesson
    • Learning Objectives
    • Vocabulary
    • Learning Material
  • 1.1 Lab Exercises
    • Overview
    • Task A: Get comfortable on the command line
    • Task B: Download the Arabidopsis thaliana genome from TAIR
    • Mastering Content
• Lesson 2: Introduction to Biological Computing
  • 1.2 Instructions
  • 1.2 Resources
  • 1.2 Lesson
    • Learning Objectives
    • Vocabulary
    • Learning Material
  • 1.2 Lab Exercises
    • Overview
    • Task A: Download and run FASTQC
    • Task B: Run FASTQC and assess the quality of some Illumina shotgun data
    • Mastering Content
• Lesson 3: Compute Clusters and Programming Languages
  • 1.3 Instructions
  • 1.3 Resources
  • 1.3 Lesson
    • Learning Objectives
    • Vocabulary
    • Learning Material
  • 1.3 Lab Exercises
    • Overview
    • Task A: Organize your directories and clean up
• Lesson 4: Writing a Scientific Manuscript
  • 1.4 Instructions
  • 1.4 Resources
  • 1.4 Lesson
    • Learning Objectives
    • Vocabulary
    • Learning Material
  • 1.4 Lab Exercises
    • Overview
    • Task A
    • Task B: Cleaning up after ourselves
    • Mastering Content