American Campus Tree Genomes
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Contents:
Introduction
Course Setup
Module 1: Plant Genomics
Lesson 1: Introduction to Plant Genomics
Lesson 2: Introduction to Biological Computing
Lesson 3: Compute Clusters and Programming Languages
Lesson 4: Writing a Scientific Manuscript
Module 2: Planning a Genome Project
Module 3: Genome Assembly
Module 4: Genome Annotation
Module 5: Comparative Genomics
Module 6: Publishing Scientific Results
American Campus Tree Genomes
Module 1: Plant Genomics
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Module 1: Plant Genomics
Lessons:
Lesson 1: Introduction to Plant Genomics
1.1 Instructions
1.1 Resources
1.1 Lesson
Learning Objectives
Vocabulary
Learning Material
1.1 Lab Exercises
Overview
Task A: Get comfortable on the command line
Task B: Download the
Arabidopsis thaliana
genome from TAIR
Mastering Content
Lesson 2: Introduction to Biological Computing
1.2 Instructions
1.2 Resources
1.2 Lesson
Learning Objectives
Vocabulary
Learning Material
1.2 Lab Exercises
Overview
Task A: Download and run FASTQC
Task B: Run FASTQC and assess the quality of some Illumina shotgun data
Mastering Content
Lesson 3: Compute Clusters and Programming Languages
1.3 Instructions
1.3 Resources
1.3 Lesson
Learning Objectives
Vocabulary
Learning Material
1.3 Lab Exercises
Overview
Task A: Organize your directories and clean up
Lesson 4: Writing a Scientific Manuscript
1.4 Instructions
1.4 Resources
1.4 Lesson
Learning Objectives
Vocabulary
Learning Material
1.4 Lab Exercises
Overview
Task A
Task B: Cleaning up after ourselves
Mastering Content
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