American Campus Tree Genomes
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Contents:
Introduction
Course Setup
Module 1: Plant Genomics
Module 2: Planning a Genome Project
Module 3: Genome Assembly
Lesson 1: Assembly Algorithms
Lesson 2: Building a Draft Genome
3.2 Instructions
3.2 Resources
3.2 Lesson
3.2 Lab Exercises
Lesson 3: Scaffolding Algorithms
Lesson 4: Interacting with Hi-C Maps
Lesson 5: Assessing Completeness
Module 4: Genome Annotation
Module 5: Comparative Genomics
Module 6: Publishing Scientific Results
American Campus Tree Genomes
Module 3: Genome Assembly
Lesson 2: Building a Draft Genome
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Lesson 2: Building a Draft Genome
Learning Material:
3.2 Instructions
3.2 Resources
3.2 Lesson
Learning Objectives
Vocabulary
Learning Material
3.2 Lab Exercises
Overview
Task A:
Step 1: What is haplotype-aware assembly?
Mastering Content
So I have an Assembly… Now What?
Step 1: Understand the output
Step 2: Get the basic stats.
Step 2: Figure out the lengths of contigs
Step 3: Check out the assembly produced with ALL of the data, using the Hi-C integrated build
Assessing haplotypes
Step 1: Run Assemblytics